Orsiris de Jong c149ce0b3a Python log mysql connection errors and harden config retrieval (#12058)
* Make usage of logger, also harden exception logging

* Make usage of hardened command_runner

This is a hardened version of subprocess.call which handles timeout, encoding and various errors that may happen during execution

* Remove unused exception logging

* Fix bogus exception logging

* Rename exception to match log line

* Make command_runner pylint friendly under Unix

* Add copyrights to my parts of code
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